- Basic information
- CohesinDB ID: CDBP00412590
- Locus: chr21-9340714-9347060
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Data sourse: GSE118494, ENCSR000DZP, GSE67783, ENCSR000BKV, GSE86191, GSE116868, GSE111913, ENCSR879KXD, GSE206145, GSE206145-NatGen2015, ENCSR000BMY, ENCSR153HNT, GSE83726, GSE116344, GSE145327, GSE50893, GSE126755
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Cell type: RH4, GM2610, H9-hESC, RPE, GM2630, Fibroblast, GM2255, IMR-90, K-562, SNYDER, MB157, GM12878, GM2588, RT-112, GM19239, HCT-116, GM19238, Neutrophil, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 6% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.789
- Subunit: SA1,Rad21,SMC1,SA2,SMC3
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
45% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 60%,
"9_Het": 34%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: .
- Target gene symbol (double-evidenced CRMs): TEKT4P2
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops