Deatailed information for cohesin site CDBP00412685
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBP00412685
- Locus: chr21-9721722-9722064
- Data sourse: GSE206145-NatGen2015, GSE67783
- Cell type: Fibroblast, HSPC
- DNA Sequence of binding site: UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1,SA2
- CTCF binding site: CTCF CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
- Hi-C loops: False Hi-ChIP loops: False ChIA-PET loops: False
- Compartment: 41% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
".": 100%,
"NotApplicable": 0%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2). - Co-bound Transcriptional factors: JUN, ZNF512, ATF7, ATF2
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
- Related loop: chr21:5225000-5250000~~chr21:9725000-9750000, chr21:7250000-7275000~~chr21:9725000-9750000, chr21:7925000-7950000~~chr21:9725000-9750000, chr21:7950000-7975000~~chr21:9725000-9750000, chr21:9625000-9650000~~chr21:9725000-9750000, chr21:9725000-9750000~~chr21:10000000-10025000, chr21:9725000-9750000~~chr21:10100000-10125000, chr21:9725000-9750000~~chr21:10325000-10350000, chr21:9725000-9750000~~chr21:10450000-10475000, chr21:9725000-9750000~~chr21:10775000-10800000, chr21:9725000-9750000~~chr21:10800000-10825000, chr21:9725000-9750000~~chr21:9825000-9850000, chr21:9725000-9750000~~chr21:9850000-9875000, chr21:9725000-9750000~~chr21:9875000-9900000, chr21:9725000-9750000~~chr21:9900000-9925000,
Tools:
- Assay
