Browse_each

Basic information

CohesinDB ID: CDBP00412689

Locus: chr21-9735304-9736086

Data sourse: GSE67783, GSE86191, GSE111913, GSE206145, GSE206145-NatGen2015

Cell type: RPE, Fibroblast, HCT-116, RT-112, HSPC

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 2% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.944

Subunit: SA1,Rad21,SA2

CTCF binding site: CTCF CTCF motif: False

Genomic location: Intergenic

3D genome

TAD boundary: non-Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: False ChIA-PET loops: True

Compartment: 41% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): False

Chromatin annotation: ".": 100%, "NotApplicable": 0%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: RUNX1, TRP47, POU2F2, CHD8, FOXA2, POU5F1, MYCN, ZFX, XBP1, WT1, ZBTB48, ZSCAN5A, STAT1, ERG, RELA, TARDBP, OGG1, ATF3, MYC, SP140, GRHL3, CBFB, STAT3, TP63, ZNF143, CHD1, TRIM28, CREB1, RBM39, EZH2, ESR1, OCA2, GABPB1, CTCF, SPI1, REST, RXR, HEXIM1, HNRNPLL, NOTCH3, BRD4, AATF, HCFC1R1, SMC3, STAG1

Target gene symbol (double-evidenced CRMs): .

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 0

Related genes and loops

Related gene:

eachgene

Deatailed information for cohesin site CDBP00412689