- Basic information
- CohesinDB ID: CDBP00412690
- Locus: chr21-9736401-9736849
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Data sourse: GSE206145-NatGen2015, GSE67783, GSE86191
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Cell type: Fibroblast, HCT-116, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: SA1,Rad21,SA2
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
41% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
".": 100%,
"NotApplicable": 0%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: .
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
- Related loop:
chr21:5225000-5250000~~chr21:9725000-9750000,
chr21:7250000-7275000~~chr21:9725000-9750000,
chr21:7925000-7950000~~chr21:9725000-9750000,
chr21:7950000-7975000~~chr21:9725000-9750000,
chr21:9625000-9650000~~chr21:9725000-9750000,
chr21:9725000-9750000~~chr21:10000000-10025000,
chr21:9725000-9750000~~chr21:10100000-10125000,
chr21:9725000-9750000~~chr21:10325000-10350000,
chr21:9725000-9750000~~chr21:10450000-10475000,
chr21:9725000-9750000~~chr21:10775000-10800000,
chr21:9725000-9750000~~chr21:10800000-10825000,
chr21:9725000-9750000~~chr21:9825000-9850000,
chr21:9725000-9750000~~chr21:9850000-9875000,
chr21:9725000-9750000~~chr21:9875000-9900000,
chr21:9725000-9750000~~chr21:9900000-9925000,