- Basic information
- CohesinDB ID: CDBP00412699
- Locus: chr21-9753950-9754315
-
Data sourse: GSE116344, GSE67783, GSE83726
-
Cell type: RH4, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1,Rad21
-
CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
30% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
".": 100%,
"NotApplicable": 0%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: OCA2, SPI1, MAFF, NCOA3
- Target gene symbol (double-evidenced CRMs): TPTE
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000274391,
- Related loop:
chr21:5225000-5250000~~chr21:9725000-9750000,
chr21:5225000-5250000~~chr21:9750000-9775000,
chr21:5250000-5275000~~chr21:9750000-9775000,
chr21:5375000-5400000~~chr21:9750000-9775000,
chr21:7250000-7275000~~chr21:9725000-9750000,
chr21:7250000-7275000~~chr21:9750000-9775000,
chr21:7925000-7950000~~chr21:9725000-9750000,
chr21:7950000-7975000~~chr21:9725000-9750000,
chr21:7950000-7975000~~chr21:9750000-9775000,
chr21:8025000-8050000~~chr21:9750000-9775000,
chr21:8775000-8800000~~chr21:9750000-9775000,
chr21:8975000-9000000~~chr21:9750000-9775000,
chr21:9550000-9575000~~chr21:9750000-9775000,
chr21:9625000-9650000~~chr21:9725000-9750000,
chr21:9650000-9675000~~chr21:9750000-9775000,
chr21:9725000-9750000~~chr21:10000000-10025000,
chr21:9725000-9750000~~chr21:10100000-10125000,
chr21:9725000-9750000~~chr21:10325000-10350000,
chr21:9725000-9750000~~chr21:10450000-10475000,
chr21:9725000-9750000~~chr21:10775000-10800000,
chr21:9725000-9750000~~chr21:10800000-10825000,
chr21:9725000-9750000~~chr21:9825000-9850000,
chr21:9725000-9750000~~chr21:9850000-9875000,
chr21:9725000-9750000~~chr21:9875000-9900000,
chr21:9725000-9750000~~chr21:9900000-9925000,
chr21:9750000-9775000~~chr21:10000000-10025000,
chr21:9750000-9775000~~chr21:10100000-10125000,
chr21:9750000-9775000~~chr21:10325000-10350000,
chr21:9750000-9775000~~chr21:10350000-10375000,
chr21:9750000-9775000~~chr21:10400000-10425000,
chr21:9750000-9775000~~chr21:10575000-10600000,
chr21:9750000-9775000~~chr21:10625000-10650000,
chr21:9750000-9775000~~chr21:10750000-10775000,
chr21:9750000-9775000~~chr21:10775000-10800000,
chr21:9750000-9775000~~chr21:13000000-13025000,
chr21:9750000-9775000~~chr21:9850000-9875000,