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Basic information

CohesinDB ID: CDBP00412703

Locus: chr21-9766897-9768818

Data sourse: ENCSR000BTQ, GSE206145-GSE177045, GSE131606, GSE143937, GSE67783, GSE72082, GSE86191, GSE138405, GSE116868, GSE25021, GSE111913, ENCSR000BLY, ENCSR879KXD, GSE76893, GSE206145, GSE206145-NatGen2015, GSE83726, ENCSR703TNG, GSE126990, GSE116344

Cell type: MCF-7, RPE, Hela-Kyoto, Fibroblast, HCT-116, MB157, RH4, RT-112, SK-N-SH, K-562, HSPC, DKO

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 7% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.867

Subunit: SA1,Rad21,SA2,SMC1

CTCF binding site: CTCF CTCF motif: False

Genomic location: Intergenic

3D genome

TAD boundary: non-Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: False ChIA-PET loops: True

Compartment: 30% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): Enhancer

Super enhancer (SEdb): False

Chromatin annotation: ".": 100%, "NotApplicable": 0%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: XBP1, KDM4B, SUZ12, RBFOX2, PBX2, UBTF, HDGF, ATF3, THAP1, CBFB, TP63, ELF1, TRIM28, ETV1, NFE2L2, SMAD5, ESR1, OCA2, ZFP91, CTCF, TCF12, E4F1, ZNF75A, DPF2, E2F6, TRIM24, ZNF512B, E2F1, TEAD4, GTF2F1, EHMT2, POU2F2, MYCN, ZNF263, POU5F1, RUNX1T1, KDM4C, CTBP1, ZBTB48, STAT1, TBP, ERG, OGG1, ETS1, EZH1, SMARCA4, GRHL3, FOXK2, GABPA, STAT3, IKZF1, RCOR1, ZNF639, VDR, CREB1, ZBTB11, EZH2, GABPB1, PHF8, ELF4, SPI1, PCBP1, HDAC2, GATA2, FLI1, HCFC1, NR2C2, SMARCA5, NCOA2, PTBP1, RUNX1, AHRR, CBX1, HDAC1, SIRT6, SIN3A, ZFX, POU4F2, NFKBIA, TET2, ZBTB2, CREBBP, IRF2, TAF15, ARNT, NRF1, NFIB, SNIP1, ETV6, NR2C1, SUPT5H, GMEB1, KDM6B, C11orf30, L3MBTL2, SETDB1, MAFK, PHF20, ZBTB7A, ATF7, HNRNPLL, BCOR, MBD2, AATF, SMC3, STAG1, MLLT1, NFATC3, TRP47, PPARG, CBX3, MTA3, TBL1X, FOXA2, CREM, E2F8, AGO1, CHD2, WT1, ZBTB33, CDK9, ZKSCAN1, YY1, RELA, TARDBP, ZNF148, NEUROD1, SP140, ZFP36, HIF1A, SKIL, MGA, MAF1, MAX, MTA1, AGO2, PLAG1, TLE3, NCOA3, NR2F2, NR2F1, KDM5B, PKNOX1, ARRB1, AR, TAF1, ZBTB40, RXR, EGLN2, HEXIM1, EGR1, NOTCH3, BRD4, ILF3, JUND, MAZ, ZNF24, ZNF316

Target gene symbol (double-evidenced CRMs): TPTE

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 0

Related genes and loops

Related gene: ENSG00000274391,

eachgene

Deatailed information for cohesin site CDBP00412703