- Basic information
- CohesinDB ID: CDBP00412714
- Locus: chr21-9790335-9791861
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Data sourse: GSE67783, GSE86191, GSE111913, GSE206145-NatGen2015, GSE83726, GSE103477, GSE126755, GSE55407
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Cell type: Fibroblast, RH4, HCT-116, THP-1, RT-112, Neutrophil, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 4% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.922
- Subunit: SMC3,Rad21,SA2,SA1
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
30% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
".": 100%,
"NotApplicable": 0%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: TRIM28, SPI1, CEBPA
- Target gene symbol (double-evidenced CRMs): TPTE
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000274391,
- Related loop:
chr21:5225000-5250000~~chr21:9775000-9800000,
chr21:5350000-5375000~~chr21:9775000-9800000,
chr21:7950000-7975000~~chr21:9775000-9800000,
chr21:9000000-9025000~~chr21:9775000-9800000,
chr21:9775000-9800000~~chr21:10325000-10350000,
chr21:9775000-9800000~~chr21:10575000-10600000,
chr21:9775000-9800000~~chr21:10600000-10625000,
chr21:9775000-9800000~~chr21:10625000-10650000,
chr21:9775000-9800000~~chr21:10800000-10825000,
chr21:9775000-9800000~~chr21:9875000-9900000,