- Basic information
- CohesinDB ID: CDBP00412721
- Locus: chr21-9809754-9840195
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Data sourse: GSE206145-GSE177045, GSE104888, GSE72082, GSE132649, GSE116868, ENCSR000EGW, ENCSR000BLY, GSE105028, GSE121355, GSE103477, GSE111537, GSE131606, GSE25021, ENCSR000EDW, GSE143937, GSE67783, ENCSR000BKV, GSE122299, GSE86191, GSE76893, GSE101921, GSE206145-NatGen2015, GSE120943, GSE112028, GSE116344, GSE145327, GSE80989, GSE94872, GSE118494, ENCSR338DUC, GSE76815, GSE98367, ENCSR879KXD, ENCSR000BLS, ENCSR000EHW, GSE206145, ENCSR000EHX, GSE55407, GSE110061, GSE111913, GSE155324, GSE38411, ENCSR153HNT, GSE83726, GSE50893, GSE126755, GSE131577
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Cell type: RH4, OCI-AML-3, H9-hESC, RPE, Fibroblast, VU1199-F, IMR-90, K-562, BCBL-1, DKO, GM18526, GM18951, Monocytes, GM18505, MB157, Lymphoblast, GM12878, SK-N-SH, RT-112, HeLa-Tet-On, GM19193, THP-1, GM19099, Macrophage, MCF-7, T-47D, HCT-116, HL-60, HEK293T, Hep-G2, MCF-10A, HUVEC, Neutrophil, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 18% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.622
- Subunit: NIPBL,SA1,Rad21,SMC1,SA2,ESCO2,Mau2,SMC3
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TSS,TES,Intergenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
30% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
".": 100%,
"NotApplicable": 0%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: USF1, NRF1
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops