- Basic information
- CohesinDB ID: CDBP00412742
- Locus: chr21-9896648-9896903
-
Data sourse: GSE62063
-
Cell type: Ramos
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: NIPBL
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: False
- Compartment:
30% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"15_Quies": 76%,
"9_Het": 23%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: FOXA1
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 4
- Related genes and loops
- Related gene:
- Related loop:
chr21:5225000-5250000~~chr21:9875000-9900000,
chr21:7325000-7350000~~chr21:9875000-9900000,
chr21:7950000-7975000~~chr21:9875000-9900000,
chr21:9650000-9675000~~chr21:9875000-9900000,
chr21:9725000-9750000~~chr21:9875000-9900000,
chr21:9725000-9750000~~chr21:9900000-9925000,
chr21:9775000-9800000~~chr21:9875000-9900000,
chr21:9875000-9900000~~chr21:10325000-10350000,
chr21:9875000-9900000~~chr21:10350000-10375000,
chr21:9875000-9900000~~chr21:10800000-10825000,