- Basic information
- CohesinDB ID: CDBP00412766
- Locus: chr21-9958283-9959898
-
Data sourse: ENCSR000BLD, GSE206145-GSE177045, GSE72082, GSE116868, ENCSR000BLY, GSE103477, GSE131606, GSE25021, GSE115602, GSE93080, GSE67783, ENCSR000BKV, GSE86191, GSE138405, GSE76893, GSE130135, ENCSR703TNG, GSE116344, GSE76815, ENCSR000EHW, ENCSR000BMY, ENCSR000EHX, GSE55407, ENCSR000BTQ, GSE110061, GSE68388, GSE83726, GSE126990
-
Cell type: MCF-7, H1-hESC, Hela-Kyoto, HCT-116, RH4, HEK293T, MB157, THP-1, GM12878, SK-N-SH, K-562, HSPC, HuCC-T1, DKO
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 11% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.844
- Subunit: SMC3,Rad21,SA1,SMC1
-
CTCF binding site: CTCF
CTCF motif: True
- Genomic location: Intergenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
30% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"9_Het": 65%,
"15_Quies": 29%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: .
- Target gene symbol (double-evidenced CRMs): TPTE
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 56
- Related genes and loops