Deatailed information for cohesin site CDBP00412776
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- Basic information
- CohesinDB ID: CDBP00412776
- Locus: chr21-9997188-9997982
- Data sourse: GSE116344, GSE206145-NatGen2015, GSE67783, GSE86191
- Cell type: RH4, Fibroblast, HCT-116, HSPC
- DNA Sequence of binding site: UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.956
- Subunit: SA1,Rad21,SA2
- CTCF binding site: CTCF CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
- Hi-C loops: True Hi-ChIP loops: False ChIA-PET loops: False
- Compartment: 30% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"15_Quies": 62%,
"9_Het": 38%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2). - Co-bound Transcriptional factors: .
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 4
- Related genes and loops
- Related gene:
- Related loop: chr21:10000000-10025000~~chr21:10100000-10125000, chr21:10000000-10025000~~chr21:10325000-10350000, chr21:10000000-10025000~~chr21:10625000-10650000, chr21:10000000-10025000~~chr21:10750000-10775000, chr21:5225000-5250000~~chr21:10000000-10025000, chr21:5225000-5250000~~chr21:9975000-10000000, chr21:7950000-7975000~~chr21:10000000-10025000, chr21:7950000-7975000~~chr21:9975000-10000000, chr21:9725000-9750000~~chr21:10000000-10025000, chr21:9750000-9775000~~chr21:10000000-10025000, chr21:9975000-10000000~~chr21:10325000-10350000,
Tools:
- Assay
