- Basic information
- CohesinDB ID: CDBP00412780
- Locus: chr21-10014553-10015452
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Data sourse: GSE206145-GSE177045, GSE72082, ENCSR000FAD, ENCSR000BSB, ENCSR501LQA, ENCSR000BLY, ENCSR000EDW, ENCSR000BUC, ENCSR000DYE, ENCSR917QNE, ENCSR000DZP, ENCSR000EAC, ENCSR000BKV, GSE138405, GSE120943, ENCSR703TNG, ENCSR000EEG, GSE98367, ENCSR000BLS, ENCSR000EHW, GSE206145, GSE62063, ENCSR000BMY, ENCSR000EHX, ENCSR635OSG, ENCSR000BTQ, ENCSR853VWZ, ENCSR054FKH, ENCSR000EDE, GSE126755, ENCSR000ECS, ENCSR481YWD
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Cell type: MCF-7, Hela-Kyoto, HCT-116, Monocytes, HEK293T, Hep-G2, GM12878, A-549, HeLa-S3, SK-N-SH, K-562, Liver, Neutrophil, Macrophage, Ramos
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 10% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.833
- Subunit: NIPBL,NIPBL-antibody2,Rad21,NIPBL-antibody1,SMC3,SMC1,Mau2,NIPBL-antibody4,SMC3ac,NIPBL-antibody3
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
41% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 89%,
"9_Het": 11%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: .
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops