- Basic information
- CohesinDB ID: CDBP00412809
- Locus: chr21-10097358-10099311
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Data sourse: GSE206145-GSE177045, GSE67783, GSE86191, GSE62063, GSE116344, GSE25021
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Cell type: MCF-7, RH4, HCT-116, HSPC, Ramos
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 3% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.944
- Subunit: NIPBL,SA1,Rad21,Mau2
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
41% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 72%,
"9_Het": 28%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: .
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
- Related loop:
chr21:10000000-10025000~~chr21:10100000-10125000,
chr21:10075000-10100000~~chr21:10325000-10350000,
chr21:10100000-10125000~~chr21:10250000-10275000,
chr21:10100000-10125000~~chr21:10325000-10350000,
chr21:5200000-5225000~~chr21:10100000-10125000,
chr21:5225000-5250000~~chr21:10100000-10125000,
chr21:5250000-5275000~~chr21:10100000-10125000,
chr21:7250000-7275000~~chr21:10100000-10125000,
chr21:9725000-9750000~~chr21:10100000-10125000,
chr21:9750000-9775000~~chr21:10100000-10125000,
chr21:9850000-9875000~~chr21:10100000-10125000,