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Basic information

CohesinDB ID: CDBP00412820

Locus: chr21-10118199-10129709

Data sourse: GSE206145-GSE177045, GSE116868, ENCSR000BLY, GSE105028, GSE111537, GSE25021, GSE131606, GSE165895, GSE67783, ENCSR000BKV, GSE86191, GSE206145-NatGen2015, GSE120943, GSE116344, GSE118494, ENCSR338DUC, GSE98367, GSE206145, ENCSR000EHX, GSE111913, ENCSR153HNT, GSE68388, GSE83726, GSE126755, GSE38411

Cell type: RH4, HuCC-T1, H9-hESC, RPE, Fibroblast, Neutrophil, IMR-90, K-562, BCBL-1, DKO, HFFc6, Monocytes, MB157, SK-N-SH, RT-112, Macrophage, MCF-7, HCT-116, Hep-G2, OCI-AML-3, HSPC

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 8% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.767

Subunit: SA1,Rad21,SMC1,SA2,Mau2,SMC3

CTCF binding site: CTCF CTCF motif: False

Genomic location: TSS,TES

3D genome

TAD boundary: non-Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: False ChIA-PET loops: True

Compartment: 41% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): Enhancer

Super enhancer (SEdb): False

Chromatin annotation: "9_Het": 55%, "15_Quies": 28%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: GTF3C2, ZNF143

Target gene symbol (double-evidenced CRMs): .

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 323

Related genes and loops

Related gene:

Tools:

Assay

refGene

Ruler

Cohesin site CDBP00412820

CDBP00412820 regulated genes

Related cohesin loop

Deatailed information for cohesin site CDBP00412820

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