- Basic information
- CohesinDB ID: CDBP00412822
- Locus: chr21-10133108-10137150
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Data sourse: ENCSR000BLD, GSE206145-GSE177045, GSE72082, GSE116868, ENCSR000EGW, ENCSR000BLY, GSE105028, GSE111537, GSE131606, GSE25021, GSE115602, ENCSR000BTU, GSE93080, GSE143937, GSE67783, ENCSR000BKV, GSE86191, GSE138405, GSE76893, GSE206145-NatGen2015, GSE112028, GSE116344, GSE118494, ENCSR338DUC, ENCSR879KXD, ENCSR000BLS, GSE206145, ENCSR000ECE, ENCSR000BMY, ENCSR000EHX, GSE97394, GSE110061, GSE129526, GSE111913, GSE38411, ENCSR054FKH, ENCSR153HNT, GSE83726, GSE126990, GSE50893, GSE131577
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Cell type: RH4, H9-hESC, RPE, Fibroblast, Ishikawa, IMR-90, K-562, BCBL-1, DKO, H1-hESC, MB157, GM12878, SK-N-SH, RT-112, HeLa-Tet-On, GM19193, HUES64, MCF-7, Hela-Kyoto, HCT-116, HL-60, Hep-G2, OCI-AML-3, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 16% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.733
- Subunit: SA1,Rad21,SMC1,SA2,SMC3
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TSS,TES
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: False
- Compartment:
41% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"9_Het": 56%,
"15_Quies": 43%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: .
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 157
- Related genes and loops