- Basic information
- CohesinDB ID: CDBP00412827
- Locus: chr21-10151637-10152903
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Data sourse: ENCSR000BTU, GSE206145-GSE177045, GSE143937, GSE104888, GSE67783, ENCSR000BKV, GSE86191, GSE25021, ENCSR000BLY, ENCSR879KXD, GSE105028, GSE55407, ENCSR000EHX, GSE83726, GSE116344, GSE131606, GSE131577
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Cell type: MCF-7, HCT-116, HL-60, RH4, THP-1, Ishikawa, DKO, SK-N-SH, K-562, HSPC, H9-hESC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 6% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.878
- Subunit: NIPBL,SA1,Rad21,SMC1
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: False
- Compartment:
41% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 59%,
"9_Het": 36%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: .
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 39
- Related genes and loops