- Basic information
- CohesinDB ID: CDBP00412833
- Locus: chr21-10271830-10274356
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Data sourse: ENCSR000BLD, GSE72082, ENCSR501LQA, GSE132649, ENCSR760NPX, ENCSR150EFU, GSE103477, ENCSR330ELC, ENCSR000BUC, ENCSR000BKV, GSE101921, ENCSR806UKK, GSE206145-NatGen2015, GSE120943, ENCSR199XBQ, GSE106870, GSE116344, GSE145327, ENCSR895JMI, GSE98367, ENCSR193NSH, ENCSR768DOX, ENCSR000BLS, GSE206145, ENCSR000ECE, ENCSR247LSH, ENCSR807WAC, ENCSR620NWG, ENCSR981FDC, ENCSR767DFK, GSE62063, ENCSR495WGO, ENCSR984DZW, ENCSR217ELF, ENCSR167MTG, ENCSR853VWZ, ENCSR956LGB, ENCSR944ZCT, ENCSR676MJK, ENCSR335RKQ, ENCSR054FKH, ENCSR537EFT, ENCSR153HNT, GSE83726, ENCSR748MVX
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Cell type: MDM, H1-hESC, RPE, Fibroblast, MCF-10A, Monocytes, Hep-G2, RH4, T-47D, CVB-hiPSC, A-549, Ramos, CNCC-WT33iPSC, K-562, CVI-hiPSC, CNCCs-H9ESC, Macrophage, H9-hESC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 16% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.800
- Subunit: NIPBL,SA1,Rad21,SMC1,SA2,SMC3
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
26% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
".": 100%,
"NotApplicable": 0%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: PAX8, FIP1L1, TOP1, HIF1A, BRD4, GTF2B, MAX
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
- Related loop:
chr21:10100000-10125000~~chr21:10250000-10275000,
chr21:10250000-10275000~~chr21:10350000-10375000,
chr21:10250000-10275000~~chr21:10400000-10425000,
chr21:10250000-10275000~~chr21:10425000-10450000,
chr21:10250000-10275000~~chr21:10450000-10475000,
chr21:10250000-10275000~~chr21:13000000-13025000,
chr21:8750000-8775000~~chr21:10250000-10275000,
chr21:8975000-9000000~~chr21:10250000-10275000,
chr21:9000000-9025000~~chr21:10250000-10275000,
chr21:9225000-9250000~~chr21:10250000-10275000,