Deatailed information for cohesin site CDBP00412839
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBP00412839
- Locus: chr21-10334816-10335443
- Data sourse: GSE67783, GSE86191
- Cell type: HCT-116, HSPC
- DNA Sequence of binding site: UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1,Rad21
- CTCF binding site: CTCF CTCF motif: False
- Genomic location: TSS,TES
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
- Hi-C loops: True Hi-ChIP loops: False ChIA-PET loops: True
- Compartment: 26% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"9_Het": 75%,
"8_ZNF/Rpts": 17%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2). - Co-bound Transcriptional factors: .
- Target gene symbol (double-evidenced CRMs): TPTE
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene: ENSG00000274391,
- Related loop: chr21:10000000-10025000~~chr21:10325000-10350000, chr21:10075000-10100000~~chr21:10325000-10350000, chr21:10100000-10125000~~chr21:10325000-10350000, chr21:10325000-10350000~~chr21:10425000-10450000, chr21:10325000-10350000~~chr21:10450000-10475000, chr21:10325000-10350000~~chr21:10525000-10550000, chr21:10325000-10350000~~chr21:10550000-10575000, chr21:10325000-10350000~~chr21:10575000-10600000, chr21:10325000-10350000~~chr21:10600000-10625000, chr21:10325000-10350000~~chr21:10625000-10650000, chr21:10325000-10350000~~chr21:10725000-10750000, chr21:10325000-10350000~~chr21:10750000-10775000, chr21:10325000-10350000~~chr21:10775000-10800000, chr21:10325000-10350000~~chr21:10800000-10825000, chr21:10325000-10350000~~chr21:13000000-13025000, chr21:10325000-10350000~~chr21:13800000-13825000, chr21:10325000-10350000~~chr21:27500000-27525000, chr21:10325000-10350000~~chr21:42950000-42975000, chr21:5200000-5225000~~chr21:10325000-10350000, chr21:5225000-5250000~~chr21:10325000-10350000, chr21:5250000-5275000~~chr21:10325000-10350000, chr21:5350000-5375000~~chr21:10325000-10350000, chr21:7250000-7275000~~chr21:10325000-10350000, chr21:7925000-7950000~~chr21:10325000-10350000, chr21:7950000-7975000~~chr21:10325000-10350000, chr21:8650000-8675000~~chr21:10325000-10350000, chr21:8675000-8700000~~chr21:10325000-10350000, chr21:8750000-8775000~~chr21:10325000-10350000, chr21:8775000-8800000~~chr21:10325000-10350000, chr21:9225000-9250000~~chr21:10325000-10350000, chr21:9575000-9600000~~chr21:10325000-10350000, chr21:9650000-9675000~~chr21:10325000-10350000, chr21:9725000-9750000~~chr21:10325000-10350000, chr21:9750000-9775000~~chr21:10325000-10350000, chr21:9775000-9800000~~chr21:10325000-10350000, chr21:9850000-9875000~~chr21:10325000-10350000, chr21:9875000-9900000~~chr21:10325000-10350000, chr21:9925000-9950000~~chr21:10325000-10350000, chr21:9950000-9975000~~chr21:10325000-10350000, chr21:9975000-10000000~~chr21:10325000-10350000,
Tools:
- Assay
