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Basic information

CohesinDB ID: CDBP00412852

Locus: chr21-10366376-10368928

Data sourse: GSE118494, GSE206145-GSE177045, GSE67783, GSE86191, GSE138405, GSE116868, GSE25021, GSE111913, GSE206145, GSE206145-NatGen2015, ENCSR153HNT, GSE68388, GSE83726, GSE116344, GSE145327

Cell type: MCF-7, RPE, Hela-Kyoto, Fibroblast, HCT-116, MB157, RH4, RT-112, IMR-90, K-562, HSPC, HuCC-T1, H9-hESC

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 4% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.856

Subunit: SA1,Rad21,SMC1,SA2,Mau2

CTCF binding site: CTCF CTCF motif: False

Genomic location: Intergenic

3D genome

TAD boundary: non-Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: False ChIA-PET loops: True

Compartment: 26% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): True

Chromatin annotation: "9_Het": 50%, "8_ZNF/Rpts": 34%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: .

Target gene symbol (double-evidenced CRMs): .

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 244

Related genes and loops

Related gene:

eachgene

Deatailed information for cohesin site CDBP00412852