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Basic information

CohesinDB ID: CDBP00412853

Locus: chr21-10370952-10374468

Data sourse: GSE67783, GSE86191, GSE122299, GSE206145-NatGen2015, GSE62063, GSE68388

Cell type: Fibroblast, HCT-116, HEK293T, HSPC, HuCC-T1, Ramos

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 2% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.933

Subunit: NIPBL,SA1,Rad21,SMC1,SA2

CTCF binding site: CTCF CTCF motif: False

Genomic location: Intergenic

3D genome

TAD boundary: non-Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: False ChIA-PET loops: True

Compartment: 26% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): True

Chromatin annotation: "9_Het": 62%, "8_ZNF/Rpts": 28%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: .

Target gene symbol (double-evidenced CRMs): .

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 161

Related genes and loops

Related gene:

eachgene

Deatailed information for cohesin site CDBP00412853