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Basic information

CohesinDB ID: CDBP00412862

Locus: chr21-10399955-10406392

Data sourse: ENCSR000BLD, GSE206145-GSE177045, GSE72082, GSE116868, ENCSR000EGW, ENCSR000BLY, GSE105028, ENCSR000ECS, GSE121355, GSE103477, GSE111537, GSE131606, GSE108869, ENCSR000EDW, GSE25021, ENCSR000BUC, GSE115602, ENCSR000BTU, GSE93080, GSE143937, GSE67783, ENCSR000BKV, GSE86191, GSE138405, GSE76893, GSE206145-NatGen2015, GSE112028, GSE130135, ENCSR703TNG, GSE116344, GSE138105, GSE145327, GSE80989, GSE94872, ENCSR895JMI, GSE118494, ENCSR000EEG, ENCSR879KXD, ENCSR000BLS, GSE206145, ENCSR000ECE, ENCSR247LSH, ENCSR807WAC, ENCSR767DFK, ENCSR217ELF, ENCSR000BTQ, GSE105004, ENCSR167MTG, ENCSR853VWZ, ENCSR956LGB, GSE55407, GSE110061, GSE129526, GSE111913, ENCSR054FKH, ENCSR000EDE, ENCSR153HNT, GSE68388, GSE83726, GSE126990, GSE50893, ENCSR748MVX, GSE38411

Cell type: RH4, SLK, HuCC-T1, H9-hESC, RPE, Fibroblast, Ishikawa, VU1199-F, HeLa-S3, IMR-90, BCBL-1, K-562, DKO, H1-hESC, GM18951, MB157, GM12878, SK-N-SH, GM19239, HeLa-Tet-On, RT-112, THP-1, GM19099, MCF-7, GM12892, Hela-Kyoto, HCT-116, HEK293T, Hep-G2, A-549, HUVEC, HeLa, OCI-AML-3, HSPC

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 31% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.611

Subunit: SA1,Rad21,SMC1,SA2,ESCO2,Mau2,SMC3

CTCF binding site: CTCF CTCF motif: False

Genomic location: TSS,TES,Intergenic

3D genome

TAD boundary: non-Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: False ChIA-PET loops: True

Compartment: 26% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): True

Chromatin annotation: "9_Het": 54%, "8_ZNF/Rpts": 33%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: RXR, STAT3

Target gene symbol (double-evidenced CRMs): TPTE

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 439

Related genes and loops

Related gene: ENSG00000274391,

eachgene

Deatailed information for cohesin site CDBP00412862