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Basic information

CohesinDB ID: CDBP00412867

Locus: chr21-10417488-10418105

Data sourse: GSE145327, GSE67783, GSE86191

Cell type: HCT-116, HSPC, H9-hESC

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 1% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.967

Subunit: SA1,Rad21

CTCF binding site: CTCF CTCF motif: False

Genomic location: Intergenic

3D genome

TAD boundary: non-Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: False ChIA-PET loops: True

Compartment: 26% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): True

Chromatin annotation: "9_Het": 72%, "8_ZNF/Rpts": 20%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: POU2F2, CHD8, EBF1, POU4F2, XBP1, GTF2B, ZBTB48, SUZ12, ERG, YY1, RELA, MYC, RAD21, SP140, HIF1A, NR3C1, NCOA3, EZH2, ESR1, OCA2, USF2, CTCF, TCF12, MAFK, SPI1, AR, GATA6, PAX8, GATA2, HNRNPLL, BRD4, TFAP2C

Target gene symbol (double-evidenced CRMs): TPTE

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 0

Related genes and loops

Related gene: ENSG00000274391,

eachgene

Deatailed information for cohesin site CDBP00412867