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Basic information

CohesinDB ID: CDBP00412868

Locus: chr21-10418382-10419061

Data sourse: GSE145327, GSE67783

Cell type: HSPC, H9-hESC

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 1% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.978

Subunit: SA1,Rad21

CTCF binding site: CTCF CTCF motif: False

Genomic location: Intergenic

3D genome

TAD boundary: non-Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: False ChIA-PET loops: True

Compartment: 26% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): True

Chromatin annotation: "9_Het": 73%, "8_ZNF/Rpts": 19%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: ZNF394, ZNF426, SMC1A, CHD8, ZNF697, CEBPA, GTF2B, DUX4, ZNF433, FOXA1, ZNF654, HOXB13, ZBTB21, ZBTB8A, MYC, ZFP64, PRDM12, ZNF781, ZNF518A, CEBPG, ZNF629, GRHL2, ZNF140, CTCF, SPI1, AR, REST, ARID1A, ZNF623, ZC3H11A, ZNF555, ZNF34

Target gene symbol (double-evidenced CRMs): TPTE

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 0

Related genes and loops

Related gene: ENSG00000274391,

eachgene

Deatailed information for cohesin site CDBP00412868