- Basic information
- CohesinDB ID: CDBP00412877
- Locus: chr21-10439484-10440278
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Data sourse: GSE116344, GSE206145-GSE177045, GSE67783
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Cell type: MCF-7, RH4, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: Mau2,SA1,Rad21
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
26% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"9_Het": 79%,
"8_ZNF/Rpts": 18%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: PAX5, NKX2-1
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
- Related loop:
chr21:10250000-10275000~~chr21:10425000-10450000,
chr21:10325000-10350000~~chr21:10425000-10450000,
chr21:10425000-10450000~~chr21:31775000-31800000,
chr21:5225000-5250000~~chr21:10425000-10450000,
chr21:7925000-7950000~~chr21:10425000-10450000,
chr21:7950000-7975000~~chr21:10425000-10450000,
chr21:8025000-8050000~~chr21:10425000-10450000,
chr21:8675000-8700000~~chr21:10425000-10450000,
chr21:8750000-8775000~~chr21:10425000-10450000,
chr21:8775000-8800000~~chr21:10425000-10450000,
chr21:9000000-9025000~~chr21:10425000-10450000,