Deatailed information for cohesin site CDBP00412878
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- Basic information
- CohesinDB ID: CDBP00412878
- Locus: chr21-10440725-10441051
- Data sourse: GSE116344, GSE145327, GSE206145-NatGen2015
- Cell type: Fibroblast, RH4, CNCC-WT33iPSC
- DNA Sequence of binding site: UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: Rad21,SA2
- CTCF binding site: CTCF CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
- Hi-C loops: True Hi-ChIP loops: False ChIA-PET loops: False
- Compartment: 26% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"9_Het": 67%,
"8_ZNF/Rpts": 31%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2). - Co-bound Transcriptional factors: .
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
- Related loop: chr21:10250000-10275000~~chr21:10425000-10450000, chr21:10325000-10350000~~chr21:10425000-10450000, chr21:10425000-10450000~~chr21:31775000-31800000, chr21:5225000-5250000~~chr21:10425000-10450000, chr21:7925000-7950000~~chr21:10425000-10450000, chr21:7950000-7975000~~chr21:10425000-10450000, chr21:8025000-8050000~~chr21:10425000-10450000, chr21:8675000-8700000~~chr21:10425000-10450000, chr21:8750000-8775000~~chr21:10425000-10450000, chr21:8775000-8800000~~chr21:10425000-10450000, chr21:9000000-9025000~~chr21:10425000-10450000,
Tools:
- Assay
