- Basic information
- CohesinDB ID: CDBP00412891
- Locus: chr21-10456131-10456773
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Data sourse: GSE62063, GSE111913, GSE67783, GSE86191
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Cell type: RT-112, HCT-116, HSPC, Ramos
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.956
- Subunit: NIPBL,SA1,Rad21,SMC1,SA2
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TSS
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
26% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"9_Het": 70%,
"8_ZNF/Rpts": 13%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: .
- Target gene symbol (double-evidenced CRMs): TPTE
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 67
- Related genes and loops
- Related gene:
ENSG00000274391,
- Related loop:
chr21:10250000-10275000~~chr21:10450000-10475000,
chr21:10325000-10350000~~chr21:10450000-10475000,
chr21:10350000-10375000~~chr21:10450000-10475000,
chr21:10450000-10475000~~chr21:10550000-10575000,
chr21:10450000-10475000~~chr21:10750000-10775000,
chr21:10450000-10475000~~chr21:10800000-10825000,
chr21:5225000-5250000~~chr21:10450000-10475000,
chr21:5350000-5375000~~chr21:10450000-10475000,
chr21:7950000-7975000~~chr21:10450000-10475000,
chr21:8675000-8700000~~chr21:10450000-10475000,
chr21:8975000-9000000~~chr21:10450000-10475000,
chr21:9000000-9025000~~chr21:10450000-10475000,
chr21:9150000-9175000~~chr21:10450000-10475000,
chr21:9225000-9250000~~chr21:10450000-10475000,
chr21:9725000-9750000~~chr21:10450000-10475000,