- Basic information
- CohesinDB ID: CDBP00412925
- Locus: chr21-10547302-10549059
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Data sourse: GSE86191, GSE25021, GSE67783, GSE83726
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Cell type: MCF-7, RH4, HCT-116, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.956
- Subunit: SA1,Rad21
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
30% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"9_Het": 68%,
"15_Quies": 27%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: .
- Target gene symbol (double-evidenced CRMs): TPTE
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000274391,
- Related loop:
chr21:10325000-10350000~~chr21:10525000-10550000,
chr21:10325000-10350000~~chr21:10550000-10575000,
chr21:10375000-10400000~~chr21:10525000-10550000,
chr21:10375000-10400000~~chr21:10550000-10575000,
chr21:10400000-10425000~~chr21:10525000-10550000,
chr21:10450000-10475000~~chr21:10550000-10575000,
chr21:5225000-5250000~~chr21:10525000-10550000,
chr21:5225000-5250000~~chr21:10550000-10575000,
chr21:7950000-7975000~~chr21:10550000-10575000,