- Basic information
- CohesinDB ID: CDBP00412934
- Locus: chr21-10581781-10582259
-
Data sourse: GSE62063, GSE67783
-
Cell type: HSPC, Ramos
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: NIPBL,SA1
-
CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
30% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"9_Het": 53%,
"15_Quies": 45%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: .
- Target gene symbol (double-evidenced CRMs): TPTE
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000274391,
- Related loop:
chr21:10325000-10350000~~chr21:10575000-10600000,
chr21:10400000-10425000~~chr21:10575000-10600000,
chr21:10575000-10600000~~chr21:10725000-10750000,
chr21:10575000-10600000~~chr21:10750000-10775000,
chr21:10575000-10600000~~chr21:10775000-10800000,
chr21:10575000-10600000~~chr21:10800000-10825000,
chr21:5225000-5250000~~chr21:10575000-10600000,
chr21:7325000-7350000~~chr21:10575000-10600000,
chr21:8750000-8775000~~chr21:10575000-10600000,
chr21:8775000-8800000~~chr21:10575000-10600000,
chr21:9000000-9025000~~chr21:10575000-10600000,
chr21:9750000-9775000~~chr21:10575000-10600000,
chr21:9775000-9800000~~chr21:10575000-10600000,
chr21:9950000-9975000~~chr21:10575000-10600000,