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Basic information

CohesinDB ID: CDBP00412947

Locus: chr21-10627114-10627799

Data sourse: GSE155828, GSE67783, GSE86191, GSE206145

Cell type: RPE, Transformed-RPE1, HCT-116, HSPC

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 1% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.956

Subunit: SA1,Rad21

CTCF binding site: CTCF CTCF motif: False

Genomic location: Intergenic

3D genome

TAD boundary: non-Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: False ChIA-PET loops: True

Compartment: 30% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): False

Chromatin annotation: "9_Het": 61%, "15_Quies": 29%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: RUNX1, TRP47, TRIM25, FOXA2, MYCN, POU5F1, AGO1, SOX2, ZFX, KDM4C, ZBTB48, ZSCAN5A, SUZ12, ERG, TARDBP, OGG1, TAF15, ATF3, RUNX2, MYC, SP140, GRHL3, CBFB, MAF1, STAT3, PRDM14, AGO2, MED1, TRIM28, CREB1, RBM39, EZH2, ESR1, CTCF, PAX8, RXR, FLI1, HNRNPLL, BRD4, NOTCH3, E2F1, AATF

Target gene symbol (double-evidenced CRMs): .

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 0

Related genes and loops

Related gene:

eachgene

Deatailed information for cohesin site CDBP00412947