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Basic information

CohesinDB ID: CDBP00412953

Locus: chr21-10649370-10650756

Data sourse: ENCSR000BLD, GSE206145-GSE177045, GSE72082, GSE105028, GSE103477, GSE111537, GSE131606, GSE25021, ENCSR000BTU, GSE143937, GSE67783, ENCSR000BKV, GSE86191, GSE138405, GSE112028, GSE130135, GSE116344, GSE145327, ENCSR000BLS, GSE206145, GSE55407, GSE129526, GSE111913, GSE131577, GSE68388, GSE83726, GSE126990, GSE50893, GSE38411

Cell type: RH4, HuCC-T1, H9-hESC, Ishikawa, GM2255, K-562, BCBL-1, DKO, H1-hESC, GM2588, RT-112, HeLa-Tet-On, THP-1, GM19099, MCF-7, GM12892, Hela-Kyoto, HCT-116, HL-60, HEK293T, Hep-G2, GM19238, OCI-AML-3, HSPC

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 14% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.722

Subunit: SA1,Rad21,SMC1,SA2,SMC3

CTCF binding site: CTCF CTCF motif: False

Genomic location: TSS,TES

3D genome

TAD boundary: non-Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: False ChIA-PET loops: True

Compartment: 30% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): False

Chromatin annotation: "9_Het": 73%, "15_Quies": 22%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: CTCF, RAD21

Target gene symbol (double-evidenced CRMs): .

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 0

Related genes and loops

Related gene:

eachgene

Deatailed information for cohesin site CDBP00412953