- Basic information
- CohesinDB ID: CDBP00412957
- Locus: chr21-10660779-10661075
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Data sourse: GSE76815, GSE101921, GSE206145-NatGen2015, ENCSR635OSG, GSE145327
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Cell type: HMEC, Fibroblast, CNCC-WT33iPSC, SK-N-SH, Liver
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.944
- Subunit: SA1,Rad21,SA2
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: False
- Compartment:
30% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"8_ZNF/Rpts": 57%,
"9_Het": 43%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: YBX1, PLRG1, ZNF207, MTA3, LCORL, HDAC1, TOP2A, FOXA2, CTBP1, XBP1, STAT1, FOXA1, NONO, ZBTB33, SUZ12, NBN, MCM2, TRIM22, PHB2, ZKSCAN1, ZBTB7B, RELA, HDGF, TARDBP, BMI1, MCM5, ZNF282, ZBTB5, MCM3, SP140, NFIB, ZNF444, PRDM1, ARNT, FOXK2, ZNF8, STAT3, IKZF1, RCOR1, NFRKB, NR3C1, NCOA3, TEAD1, EZH2, LMO2, IRF5, ZNF687, TCF12, HES1, E4F1, AR, DPF2, ZBTB40, HDAC2, SOX6, ATF7, HSF1, RAD51, ZNF280D, BRD4, ATM, ZNF512B, FOXP1, RELB, MLLT1
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops