- Basic information
- CohesinDB ID: CDBP00412959
- Locus: chr21-10664016-10664304
-
Data sourse: GSE206145-NatGen2015, GSE145327, GSE73207
-
Cell type: TF-1, Fibroblast, CNCC-WT33iPSC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: SMC3,Rad21,SA2
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: False
- Compartment:
30% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"8_ZNF/Rpts": 50%,
"9_Het": 48%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: CTBP1, ZBTB1, FOXA1, NBN, TRIM22, PHB2, RELA, ARNT, FOXK2, IKZF1, TEAD1, IRF5, TCF12, E4F1, ZBTB40, HDAC2, TAF9B, ATF7, HSF1, SOX6, ATM, ZNF512B, FOXP1, PLRG1
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops