- Basic information
- CohesinDB ID: CDBP00412960
- Locus: chr21-10666507-10666749
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Data sourse: GSE206145-NatGen2015, GSE145327, GSE80989, GSE73207
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Cell type: VU1199-F, TF-1, Fibroblast, CNCC-WT33iPSC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.956
- Subunit: SMC3,Rad21,SA2,ESCO2
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
30% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"9_Het": 58%,
"8_ZNF/Rpts": 40%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: YBX1, PLRG1, FOXA2, LCORL, TOP2A, CTBP1, ZBTB1, MTA2, STAT1, FOXA1, NONO, TBX3, NBN, MCM2, PHB2, TRIM22, ZKSCAN1, RELA, TARDBP, MCM5, ZNF282, NFIB, ARNT, FOXK2, ATF2, STAT3, IKZF1, NFRKB, TEAD1, IRF5, TCF12, SP1, E4F1, MNT, HDAC2, ZBTB40, SOX6, ATF7, HSF1, RAD51, ATM, BRD4, FOXP1, MLLT1
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops