- Basic information
- CohesinDB ID: CDBP00412963
- Locus: chr21-10668782-10669178
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Data sourse: GSE98367, GSE132649, GSE206145-NatGen2015, GSE116344, GSE145327
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Cell type: T-47D, Fibroblast, RH4, Macrophage, H9-hESC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.944
- Subunit: Rad21,SA2,SMC1
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: False
- Compartment:
30% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"8_ZNF/Rpts": 63%,
"9_Het": 36%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: YBX1, ZNF207, LCORL, EBF1, TOP2A, FOXA2, CTBP1, XBP1, STAT1, FOXA1, NONO, ZBTB33, TBX3, NBN, PHB2, HOXB13, TRIM22, OGG1, ZNF282, ARNT, NFIB, FOXK2, STAT3, MAFB, IKZF1, SFPQ, VDR, NFRKB, CEBPB, TEAD1, TRIM28, PIAS1, EZH2, MLLT1, IRF5, PKNOX1, CTCF, SPI1, E4F1, IRF1, PAX8, HDAC2, ZBTB40, GATAD2B, SOX6, ATF7, HSF1, BRD4, FOXP1, RELB, PLRG1, ATRX
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops