- Basic information
- CohesinDB ID: CDBP00412964
- Locus: chr21-10673033-10673548
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Data sourse: GSE76815, GSE131577, GSE101921, GSE206145-NatGen2015, GSE116344, GSE145327, GSE73207
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Cell type: HMEC, Fibroblast, HL-60, RH4, TF-1, CNCC-WT33iPSC, SK-N-SH, H9-hESC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 2% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.911
- Subunit: SA1,Rad21,SMC1,SA2,SMC3
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: False
- Compartment:
30% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"8_ZNF/Rpts": 50%,
"9_Het": 48%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: YBX1, POU2F2, PLRG1, LCORL, CTBP1, FOXA1, NONO, ZBTB33, NBN, MCM2, TRIM22, PHB2, ZKSCAN1, ARID3A, RELA, BMI1, MCM5, BRG1, ZNF282, RFX1, MCM3, GRHL3, NFIB, ARNT, FOXK2, STAT3, TP63, IKZF1, NFRKB, NR3C1, ESRRA, TRIM28, IRF5, PKNOX1, TCF12, HES1, E4F1, MNT, AR, HDAC2, GATAD2B, TAF9B, SOX6, HSF1, ATF7, BRD4, ATM, FOXP1, MLLT1, AHR
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops