- Basic information
- CohesinDB ID: CDBP00412967
- Locus: chr21-10678413-10679041
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Data sourse: GSE145327, GSE73207
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Cell type: TF-1, CNCC-WT33iPSC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SMC3,Rad21
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
30% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"9_Het": 51%,
"8_ZNF/Rpts": 48%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: PGR, LCORL, FOXA1, SUZ12, ZBTB7B, HDGF, BMI1, ZBTB5, PRDM1, ZNF444, TEAD1, TRIM28, BCLAF1, LMO2, ESR1, TCF12, E4F1, MNT, DPF2, PRDM4, SOX6, RAD51, ZNF512B, TEAD4, PLRG1, YBX1, CTBP1, ZBTB1, MTA2, DUX4, STAT1, NONO, NBN, ARID3A, PHB2, MYC, MCM5, RFX1, GRHL3, FOXK2, ZNF8, STAT3, IKZF1, NFRKB, NR3C1, ESRRA, CREB1, HES1, SPI1, HDAC2, GATAD2B, TAF9B, ATM, SMAD3, TBX3, MCM2, TRIM22, ARNT, NFIB, ATF2, L3MBTL2, SP1, ATF7, FOXP1, MLLT1, ZNF207, FOXA2, MTA3, GTF2B, ZBTB33, ZKSCAN1, RELA, TARDBP, NEUROD1, ZNF282, MCM3, SP140, ZNF592, NCOA3, IRF5, PKNOX1, ZNF687, ZBTB40, HSF1, BRD4
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops