- Basic information
- CohesinDB ID: CDBP00412969
- Locus: chr21-10685138-10685469
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Data sourse: GSE131577, GSE206145-NatGen2015, GSE135093, GSE145327, GSE73207
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Cell type: Fibroblast, HL-60, TF-1, IMR-90, CNCC-WT33iPSC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.944
- Subunit: SA1,Rad21,SA2,SMC3
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: False
- Compartment:
30% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"8_ZNF/Rpts": 54%,
"9_Het": 46%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: LCORL, XBP1, FOXA1, SUZ12, ZBTB7B, HDGF, BMI1, ZBTB5, PRDM1, ZNF444, TP63, TEAD1, TRIM28, BCLAF1, ESR1, TCF12, E4F1, MNT, DPF2, SOX6, RAD51, ZNF512B, TEAD4, PLRG1, YBX1, TOP2A, CTBP1, MTA2, ZBTB1, DUX4, STAT1, NONO, NBN, ARID3A, PHB2, MCM5, MYC, RFX1, GRHL3, FOXK2, ZNF8, STAT3, IKZF1, RCOR1, NFRKB, NR3C1, ESRRA, EZH2, HES1, HDAC2, GATAD2B, TAF9B, ATM, TBX3, MCM2, TRIM22, ZNF384, NFIB, ARNT, SOX11, ZNF48, ATF2, CBFA2T3, L3MBTL2, SP1, ATF7, FOXP1, MLLT1, TRP47, PPARG, FOXA2, ZNF207, MTA3, ZBTB33, HOXB13, ZKSCAN1, RELA, TARDBP, NEUROD1, ZNF282, MCM3, SP140, ZNF592, NCOA3, IRF5, PKNOX1, ZNF687, ZBTB40, YAP1, HSF1, BRD4, BRCA1, AHR
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops