- Basic information
- CohesinDB ID: CDBP00412970
- Locus: chr21-10692352-10693205
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Data sourse: GSE132649, ENCSR760NPX, GSE73207, GSE111537, GSE108869, ENCSR000BUC, GSE138405, GSE101921, GSE135093, GSE152721, GSE120943, GSE206145-NatGen2015, GSE116344, GSE145327, GSE106870, GSE94872, ENCSR895JMI, GSE76815, GSE98367, GSE155828, ENCSR807WAC, ENCSR767DFK, ENCSR217ELF, GSE110061, GSE111913, GSE126755, GSE131577
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Cell type: RH4, Transformed-RPE1, H9-hESC, HMEC, Fibroblast, HeLa-S3, Neutrophil, IMR-90, Monocytes, TF-1, HUES9, SK-N-SH, RT-112, Macrophage, T-47D, Hela-Kyoto, HCT-116, HL-60, MCF-10A, A-549, HUVEC, CNCC-WT33iPSC, OCI-AML-3, HAP1
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 11% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.733
- Subunit: SA1,Rad21,SMC1,SMC3ac,SA2,SMC3
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: False
- Compartment:
30% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"9_Het": 53%,
"8_ZNF/Rpts": 46%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: LCORL, HNF1A, XBP1, FOXA1, SUZ12, ZBTB7B, HDGF, CDK2, BMI1, ZBTB5, SMARCE1, TEAD1, TRIM28, BCLAF1, MCM7, COBLL1, LMO2, ESR1, JUN, TCF12, E4F1, MNT, PRDM4, TRIM24, SOX6, RAD51, ZNF512B, TEAD4, PLRG1, PDX1, YBX1, TOP2A, CTBP1, MTA2, ZBTB48, DUX4, STAT1, NONO, NBN, PHB2, OGG1, MCM5, RFX1, FOXK2, STAT3, ZNF8, IKZF1, NFRKB, NR3C1, ESRRA, CREB1, EZH2, GRHL2, HES1, IRF1, HDAC2, GATAD2B, ATM, RELB, CIITA, BCL6, HDAC1, TBX3, MCM2, TRIM22, NFIB, ARNT, FOS, PIAS1, KLF9, BCL11A, PHF20, ATF7, ZHX1, FOXP1, MLLT1, FOXA2, ZNF207, GTF2B, ZBTB33, ZKSCAN1, RELA, TARDBP, NEUROD1, ZNF282, MCM3, SP140, ZNF592, NCOA3, TP53, IRF5, PKNOX1, ZNF687, AR, ZBTB40, RXR, YAP1, HSF1, BRD4
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops