- Basic information
- CohesinDB ID: CDBP00412975
- Locus: chr21-10711194-10711943
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Data sourse: GSE145327, GSE25021
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Cell type: MCF-7, CNCC-WT33iPSC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1,Rad21
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
30% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"8_ZNF/Rpts": 66%,
"9_Het": 34%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: LCORL, SOX2, FOXA1, SUZ12, ZBTB7B, HNRNPK, HDGF, BMI1, ZBTB5, PRDM1, ZNF444, SMARCE1, TP63, TEAD1, TRIM28, BCLAF1, ETV1, MCM7, ESR1, CTCF, TCF12, E4F1, MNT, DPF2, PRDM4, SOX6, RAD51, ZNF512B, SMC1, EHMT2, PLRG1, YBX1, POU2F2, CHD8, TOP2A, ID3, CTBP1, MTA2, ZBTB1, DUX4, STAT1, NONO, NBN, ARID3A, PHB2, ERG, OGG1, MCM5, MYC, RFX1, RAD21, FOXK2, ZNF8, STAT3, IKZF1, RCOR1, ZNF639, NFRKB, ESRRA, CREB1, CCAR2, EZH2, HES1, IRF1, HDAC2, GATAD2B, TAF9B, ATM, HDAC1, ZFX, PCBP2, TBX3, MCM2, TRIM22, CREBBP, BRD9, NFIB, ARNT, ATF2, ZNF48, CDK8, MED1, PIAS1, SP1, BCL11A, ARID1A, ATF7, FOXP1, MLLT1, TRP47, NCOA4, FOXA2, MTA3, ZNF207, ZNF600, ZBTB33, ZKSCAN1, RELA, TARDBP, NEUROD1, ZNF282, MCM3, SP140, GATA3, ZNF592, NCOA3, KDM5B, IRF5, PKNOX1, ZNF687, TP53, AR, ZBTB40, EGLN2, EGR1, ZNF280D, BRD4, ZNF24, AHR
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops