- Basic information
- CohesinDB ID: CDBP00412984
- Locus: chr21-10730047-10730250
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Data sourse: GSE101921, GSE135093
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Cell type: HMEC, IMR-90
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SMC3,SA2,SMC1
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: False
- Compartment:
30% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"8_ZNF/Rpts": 76%,
"9_Het": 24%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: YBX1, NCOA4, PLRG1, ZNF207, MTA3, LCORL, TOP2A, CTBP1, ZBTB1, STAT1, FOXA1, NONO, ZBTB33, SUZ12, NBN, MCM2, PHB2, TRIM22, ZKSCAN1, ARID3A, ZBTB7B, HDGF, TARDBP, NEUROD1, BMI1, MCM5, ZNF282, ZBTB5, MCM3, PRDM1, NFIB, SP140, ZNF444, ARNT, FOXK2, ZNF8, IKZF1, NFRKB, ESRRA, NCOA3, TRIM28, CREB1, ZNF687, PKNOX1, IRF5, TCF12, HES1, E4F1, MNT, DPF2, ZBTB40, GATAD2B, ATF7, SOX6, BRD4, ZNF512B, FOXP1, CLOCK, MLLT1
- Target gene symbol (double-evidenced CRMs): TPTE
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops