- Basic information
- CohesinDB ID: CDBP00412987
- Locus: chr21-10734654-10735227
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Data sourse: GSE101921, GSE135093, GSE145327, GSE73207
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Cell type: HMEC, TF-1, IMR-90, CNCC-WT33iPSC, CNCCs-H9ESC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.944
- Subunit: SMC3,Rad21,SA2
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: False
- Compartment:
30% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"8_ZNF/Rpts": 63%,
"9_Het": 36%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: YBX1, ZNF207, FOXA2, TOP2A, CTBP1, FOXA1, ZBTB33, SUZ12, NBN, PHB2, TRIM22, ZKSCAN1, BMI1, NFIB, ZNF444, FOXK2, ZNF8, IKZF1, NCOA3, TRIM28, ZNF687, PKNOX1, CTCF, HES1, SP1, E4F1, MNT, HDAC2, GATAD2B, ATF7, SOX6, ZNF512B, FOXP1, PLRG1
- Target gene symbol (double-evidenced CRMs): TPTE
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops