- Basic information
- CohesinDB ID: CDBP00412988
- Locus: chr21-10735654-10735949
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Data sourse: GSE132649, GSE145327, GSE73207
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Cell type: T-47D, TF-1, CNCC-WT33iPSC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: SMC3,Rad21
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: False
- Compartment:
30% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"8_ZNF/Rpts": 61%,
"9_Het": 39%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: POU2F2, PPARG, CRY1, GTF2B, FOXA1, DDX5, MCM2, ZKSCAN1, RELA, HDGF, MCM5, ZNF444, FOXK2, TEAD1, TRIM28, EZH2, PKNOX1, TCF12, E4F1, PAX8, BRD4, FOXP1, CLOCK
- Target gene symbol (double-evidenced CRMs): TPTE
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops