- Basic information
- CohesinDB ID: CDBP00412989
- Locus: chr21-10736991-10737360
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Data sourse: GSE76815, GSE132649, GSE206145-NatGen2015, ENCSR000ECE, GSE145327, GSE80989, GSE73207
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Cell type: H1-hESC, T-47D, Fibroblast, TF-1, VU1199-F, CNCC-WT33iPSC, SK-N-SH, CNCCs-H9ESC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 2% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.911
- Subunit: SMC3,Rad21,SA2,ESCO2
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
30% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"8_ZNF/Rpts": 61%,
"9_Het": 39%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, YBX1, CHD8, PLRG1, ZNF207, LCORL, FOXA2, SOX2, CTBP1, ZBTB1, MTA2, GTF2B, XBP1, SUZ12, NBN, TRIM22, ZKSCAN1, RELA, NEUROD1, BMI1, MCM5, RAD21, PRDM1, NFIB, ARNT, MCM3, FOXK2, ZNF8, ETV6, IKZF1, RCOR1, TERF2, NCOA3, TRIM28, EZH2, ESR1, IRF5, GRHL2, CTCF, E4F1, MNT, AR, PAX8, GATAD2B, BRD4, FOXP1, MLLT1
- Target gene symbol (double-evidenced CRMs): TPTE
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops