- Basic information
- CohesinDB ID: CDBP00413006
- Locus: chr21-10789776-10790025
-
Data sourse: GSE132649, GSE145327
-
Cell type: T-47D, CNCC-WT33iPSC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: Rad21
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: False
- Compartment:
45% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"9_Het": 64%,
"8_ZNF/Rpts": 26%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: .
- Target gene symbol (double-evidenced CRMs): TPTE
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000274391,
- Related loop:
chr21:10325000-10350000~~chr21:10775000-10800000,
chr21:10350000-10375000~~chr21:10775000-10800000,
chr21:10575000-10600000~~chr21:10775000-10800000,
chr21:10600000-10625000~~chr21:10775000-10800000,
chr21:10625000-10650000~~chr21:10775000-10800000,
chr21:10650000-10675000~~chr21:10775000-10800000,
chr21:5225000-5250000~~chr21:10775000-10800000,
chr21:5350000-5375000~~chr21:10775000-10800000,
chr21:5375000-5400000~~chr21:10775000-10800000,
chr21:7225000-7250000~~chr21:10775000-10800000,
chr21:7250000-7275000~~chr21:10775000-10800000,
chr21:7275000-7300000~~chr21:10775000-10800000,
chr21:7300000-7325000~~chr21:10775000-10800000,
chr21:7325000-7350000~~chr21:10775000-10800000,
chr21:7950000-7975000~~chr21:10775000-10800000,
chr21:9000000-9025000~~chr21:10775000-10800000,
chr21:9725000-9750000~~chr21:10775000-10800000,
chr21:9750000-9775000~~chr21:10775000-10800000,