Deatailed information for cohesin site CDBP00413053
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBP00413053
- Locus: chr21-13018063-13018466
- Data sourse: GSE206145-NatGen2015, GSE67783, GSE86191
- Cell type: Fibroblast, HCT-116, HSPC
- DNA Sequence of binding site: UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: SA1,Rad21,SA2
- CTCF binding site: CTCF CTCF motif: False
- Genomic location: TSS
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
- Hi-C loops: True Hi-ChIP loops: False ChIA-PET loops: True
- Compartment: 27% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"15_Quies": 74%,
"9_Het": 26%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2). - Co-bound Transcriptional factors: .
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 6
- Related genes and loops
- Related gene:
- Related loop: chr21:10250000-10275000~~chr21:13000000-13025000, chr21:10325000-10350000~~chr21:13000000-13025000, chr21:10350000-10375000~~chr21:13000000-13025000, chr21:13000000-13025000~~chr21:13225000-13250000, chr21:13000000-13025000~~chr21:13800000-13825000, chr21:13000000-13025000~~chr21:14100000-14125000, chr21:9750000-9775000~~chr21:13000000-13025000,
Tools:
- Assay
