Deatailed information for cohesin site CDBP00413079


Check detailed explainations here

  • Basic information
  • CohesinDB ID: CDBP00413079
  • Locus: chr21-13301750-13302155
  • Data sourse: GSE67783, GSE98367
  • Cell type: HSPC, Macrophage
  • DNA Sequence of binding site: UCSC hg38
  • Cohesin category
  • Peak occupancy ratio: 0% samples have this site.
  • Cell specificity (0: conserved, 1: cell type specific): 0.978
  • Subunit: SA1,SMC1
  • CTCF binding site: non-CTCF CTCF motif: False
  • Genomic location: TSS
  • 3D genome
  • TAD boundary: non-Boundary
  • Chromatin hubs: Hub
  • Hi-C loops: True Hi-ChIP loops: False ChIA-PET loops: True
  • Compartment: 18% Hi-C samples shows Compartment A
  • Cis-regulatory elements
  • Enhancer (Fantom5): non-Enhancer
  • Super enhancer (SEdb): False
  • Chromatin annotation: "15_Quies": 74%, "9_Het": 26%,
    Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
  • Co-bound Transcriptional factors: .
  • Target gene symbol (double-evidenced CRMs): .
  • Function elements
  • Human SNPs: .
  • Number of somatic mutations (coding): 0
  • Number of somatic mutations (non-coding): 8
  • Related genes and loops

Tools:
  • Assay

refGene

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Ruler

chr21p11.1q11.1q11.211900K12000K12100K12200K12300K12400K12500K12600K12700K12800K12900K13000K13100K13200K13300K13400K13500K13600K13700K13800K13900K14000K14100K14200K14300K14400K14500K14600K14700K14800K

Cohesin site CDBP00413079

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CDBP00413079 regulated genes

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Related cohesin loop

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