- Basic information
- CohesinDB ID: CDBP00413111
- Locus: chr21-13518515-13521991
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Data sourse: GSE206145-GSE177045, ENCSR230ZWH, GSE72082, ENCSR000BLY, GSE105028, GSE25021, GSE131606, ENCSR000EDW, GSE115602, ENCSR917QNE, GSE67783, ENCSR000BKV, GSE86191, GSE76893, GSE206145-NatGen2015, ENCSR703TNG, GSE116344, ENCSR000BLS, GSE62063, ENCSR000BTQ, ENCSR167MTG, GSE111913, ENCSR000EDE, GSE68388, GSE83726
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Cell type: MCF-7, Fibroblast, HCT-116, RH4, Hep-G2, Ramos, DKO, HeLa-S3, RT-112, SK-N-SH, K-562, Liver, HSPC, HuCC-T1, H9-hESC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 11% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.833
- Subunit: NIPBL,SA1,Rad21,SMC1,SA2,Mau2,SMC3
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CTCF binding site: CTCF
CTCF motif: True
- Genomic location: TSS
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
36% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 78%,
"9_Het": 22%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: .
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 33
- Related genes and loops