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Basic information

CohesinDB ID: CDBP00413145

Locus: chr21-13806228-13807204

Data sourse: ENCSR000BLD, GSE206145-GSE177045, GSE72082, ENCSR000FAD, ENCSR501LQA, ENCSR760NPX, ENCSR000EGW, ENCSR000BLY, ENCSR150EFU, GSE103477, GSE111537, GSE131606, GSE108869, GSE25021, ENCSR000BUC, ENCSR917QNE, ENCSR000EFJ, ENCSR000BTU, GSE115602, ENCSR000EAC, GSE143937, GSE67783, ENCSR000BKV, GSE86191, GSE138405, GSE76893, GSE152721, GSE130135, ENCSR703TNG, GSE116344, ENCSR895JMI, ENCSR000EEG, GSE76815, ENCSR193NSH, ENCSR768DOX, ENCSR879KXD, ENCSR000BLS, ENCSR000EHW, GSE206145, ENCSR981FDC, ENCSR247LSH, ENCSR000BMY, ENCSR000EHX, ENCSR620NWG, ENCSR807WAC, ENCSR495WGO, ENCSR984DZW, ENCSR217ELF, ENCSR000BTQ, GSE55407, ENCSR853VWZ, ENCSR956LGB, ENCSR944ZCT, ENCSR676MJK, GSE111913, ENCSR335RKQ, ENCSR000EDE, ENCSR153HNT, GSE68388, GSE83726, GSE126990, GSE50893, ENCSR748MVX, GSE131577

Cell type: RH4, GM2610, HSPC, Liver, HuCC-T1, GM2630, Ishikawa, GM12890, HeLa-S3, GM2255, IMR-90, K-562, GM18486, DKO, H1-hESC, SNYDER, GM12878, GM2588, SK-N-SH, GM19239, RT-112, THP-1, MCF-7, Hela-Kyoto, HCT-116, HL-60, HEK293T, Hep-G2, A-549, GM19238, OCI-AML-3, HAP1

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 27% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.633

Subunit: SA1,Rad21,SMC1,SA2,SMC3

CTCF binding site: CTCF CTCF motif: False

Genomic location: Intergenic

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: False ChIA-PET loops: True

Compartment: 24% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): False

Chromatin annotation: "15_Quies": 79%, "9_Het": 20%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: CTCF, RAD21, STAG1

Target gene symbol (double-evidenced CRMs): RBM11,HSPA13

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 6

Related genes and loops

Related gene: ENSG00000185272, ENSG00000155304,

eachgene

Deatailed information for cohesin site CDBP00413145