- Basic information
- CohesinDB ID: CDBP00413146
- Locus: chr21-13809209-13809482
-
Data sourse: GSE206145-NatGen2015, GSE67783
-
Cell type: Fibroblast, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1,SA2
-
CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: False
- Compartment:
24% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"15_Quies": 85%,
"9_Het": 14%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: .
- Target gene symbol (double-evidenced CRMs): RBM11,HSPA13
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 1
- Related genes and loops
- Related gene:
ENSG00000185272,
ENSG00000155304,
- Related loop:
chr21:10325000-10350000~~chr21:13800000-13825000,
chr21:10350000-10375000~~chr21:13800000-13825000,
chr21:12975000-13000000~~chr21:13800000-13825000,
chr21:13000000-13025000~~chr21:13800000-13825000,
chr21:13250000-13275000~~chr21:13800000-13825000,
chr21:13275000-13300000~~chr21:13800000-13825000,
chr21:13300000-13325000~~chr21:13800000-13825000,
chr21:13450000-13475000~~chr21:13800000-13825000,
chr21:13525000-13550000~~chr21:13800000-13825000,
chr21:13550000-13575000~~chr21:13800000-13825000,
chr21:13575000-13600000~~chr21:13800000-13825000,
chr21:13650000-13675000~~chr21:13800000-13825000,
chr21:13800000-13825000~~chr21:13950000-13975000,
chr21:13800000-13825000~~chr21:13975000-14000000,
chr21:13800000-13825000~~chr21:14025000-14050000,
chr21:13800000-13825000~~chr21:14100000-14125000,
chr21:13800000-13825000~~chr21:14125000-14150000,
chr21:13800000-13825000~~chr21:14225000-14250000,
chr21:13800000-13825000~~chr21:14375000-14400000,
chr21:13800000-13825000~~chr21:14675000-14700000,
chr21:13805524-13807565~~chr21:14118402-14121049,
chr21:13806384-13807544~~chr21:14119421-14121216,
chr21:5225000-5250000~~chr21:13800000-13825000,
chr21:6900000-6925000~~chr21:13800000-13825000,
chr21:6925000-6950000~~chr21:13800000-13825000,