- Basic information
- CohesinDB ID: CDBP00413148
- Locus: chr21-13816164-13816623
-
Data sourse: GSE206145-GSE177045, GSE67783
-
Cell type: MCF-7, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: Mau2,SA1
-
CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: False
- Compartment:
24% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"15_Quies": 79%,
"9_Het": 20%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: .
- Target gene symbol (double-evidenced CRMs): HSPA13,RBM11
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 2
- Related genes and loops
- Related gene:
ENSG00000185272,
ENSG00000155304,
- Related loop:
chr21:10325000-10350000~~chr21:13800000-13825000,
chr21:10350000-10375000~~chr21:13800000-13825000,
chr21:12975000-13000000~~chr21:13800000-13825000,
chr21:13000000-13025000~~chr21:13800000-13825000,
chr21:13250000-13275000~~chr21:13800000-13825000,
chr21:13275000-13300000~~chr21:13800000-13825000,
chr21:13300000-13325000~~chr21:13800000-13825000,
chr21:13450000-13475000~~chr21:13800000-13825000,
chr21:13525000-13550000~~chr21:13800000-13825000,
chr21:13550000-13575000~~chr21:13800000-13825000,
chr21:13575000-13600000~~chr21:13800000-13825000,
chr21:13650000-13675000~~chr21:13800000-13825000,
chr21:13800000-13825000~~chr21:13950000-13975000,
chr21:13800000-13825000~~chr21:13975000-14000000,
chr21:13800000-13825000~~chr21:14025000-14050000,
chr21:13800000-13825000~~chr21:14100000-14125000,
chr21:13800000-13825000~~chr21:14125000-14150000,
chr21:13800000-13825000~~chr21:14225000-14250000,
chr21:13800000-13825000~~chr21:14375000-14400000,
chr21:13800000-13825000~~chr21:14675000-14700000,
chr21:5225000-5250000~~chr21:13800000-13825000,
chr21:6900000-6925000~~chr21:13800000-13825000,
chr21:6925000-6950000~~chr21:13800000-13825000,